qPCR4vir Pages

By Ariel Vina Rodriguez. Welcome to my projects

Here I'm planing to post information about some of the projects I'm working. Some of them are personal projects or contributions to others people projects, and others are part of my work at FLI-INNT and particularly of my project of PhD thesis.

VisualOligoDeg

VisualOligoDeg Wiki

Visual selection of candidate primers and probes from aligned DNA sequences. A paper in preparation. See Flavivirus.

Flavivirus

A paper in preparation: "Detection, quantification and identification of Flavivirus by real time PCR and DNA microarray developed with VisualOligoDeg" Ariel Vina-Rodriguez, Konrad Sachse, Ute Ziegler, Markus Keller, Martin Eiden and Martin H. Groschup.

A fork of Orange include a few modifications specially to analice these microarray results.

HEV

Viruses. 2015 May 22;7(5):2704-26. doi: 10.3390/v7052704. Hepatitis E virus genotype 3 diversity: phylogenetic analysis and presence of subtype 3b in wild boar in Europe. Vina-Rodriguez A, Schlosser J, Becher D, Kaden V, Groschup MH, Eiden M.

A paper in preparation:

Eiden M, Vina Rodriguez A, Dremsek P, Renner C, Groschup M and Ulrich R.

High prevalence and genetic diversity of HEV in wild boar from south-west Germany

ThDySec

A paper in preparation.

ThDySec Wiki

Vina-Rodriguez A, Eiden M and Groschup M.

ThDy_DNAHybrid: design and analysis of PCR and microarray.

RobotEvo

A paper in preparation:

Vina-Rodriguez A, Winterfeld T, Eiden M and Groschup M.

RobotEvo: Lab-automation - productive programming of Tecan Evoware. RNA extraction protocols.

Nana C++ GUI Library, by Jinhao

I maintain the Doxygen generated documentation. Here an example of User Documentation and a Wiki

Author: Ariel Viña Rodríguez.

NCBI, Google Scholar, Mendeley, ResearchGate